Nagoya University researchers use E.coli to convert benzene into phenol, simplifying a chemical reaction that is difficult by conventional methods.
press released on June 11, 2018
Whole-cell biocatalyst utilizing E. coli for benzene hydroxylation activated by decoy molecules. © Osami Shoji and Masayuki Karasawa
Nagoya, Japan – Breaking carbon-hydrogen bonds is notoriously difficult in lab chemistry, yet nature does it effortlessly. Now, scientists have used E.coli bacteria to oxidize the C-H bonds in benzene to generate phenol, with a genetically inserted enzyme (cytochrome P450BM3), that originally evolved to target other molecules, long-chain fatty acids.
Getting enzymes to do novel reactions – effectively hijacking the biochemistry of living cells for our own purposes – is generally tricky, involving harsh conditions or genetic modification of the enzymes themselves.
However, researchers at Nagoya University worked around this by using "decoy" molecules, which mimic the native targets (substrates) of naturally occurring enzymes, to activate the desired reaction.
As reported in Angewandte Chemie International Edition, the research team created a compound – dubbed C7-Pro-Phe – based on amino acids. This decoy molecule resembles the fatty acids that E.coli metabolizes. Insert the decoy into an E.coli cell, and it will be mis-recognized as a fatty acid, triggering activation of the inserted P450 enzyme. Now supply benzene (C6H6), and the bacteria get busy, oxidizing C6H6 to C6H6O (phenol). No need for the usual lab kit – living cells can do complex chemistry quietly and efficiently.
General catalytic cycle of P450BM3 (black) and a plausible catalytic cycle (blue) for benzene hydroxylation catalyzed by P450BM3 with assistance of the decoy molecule. © Osami Shoji and Masayuki Karasawa
"The advantage of our system is that C7-Pro-Phe can be easily taken up by the bacteria, where it activates P450BM3 in the cell. This effectively turns each bacteriuminto a whole-cell biocatalyst," study first author Masayuki Karasawa says. "The cell is an optimal setting for the biochemical reaction. The decoys actually remodel the enzyme’s active site, giving us control over aspects of the reaction, such as stereoselectivity."
All that is needed is a ready supply of glucose – which can be recycled from waste products – to feed the E.coli.
Because a naturally occurring – rather than genetically modified – variant of the enzyme is expressed by the E.coli, it is likely that other bacteria could also be modified with the same gene to perform this job. Moreover, different decoys might be suitable for different substrates or bacteria. "A combined program of decoy-screening and mutagenesis could create a versatile toolkit for whole-cell reactions using bacteria," co-author Osami Shoji says.
The article, "Whole-Cell Biotransformation of Benzene to Phenol Catalysed by Intracellular Cytochrome P450BM3 Activated by External Additives," was published in Angewandte Chemie International Edition at DOI:10.1002/anie.201804924.
Authors
Masayuki Karasawa1, Joshua Kyle Stanfield1, Sota Yanagisawa1, Osami Shoji1,2 , and Yoshihito Watanabe3
1 Department of Chemistry, Graduate School of Science, Nagoya University
2 Core Research for Evolutional Science and Technology, Japan Science and Technology Agency
3 Research Center for Materials Science, Nagoya University
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Laboratory of Bioinorganic Chemistry, Department of Chemistry, Graduate School of Science, Nagoya University
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Funding
This work was supported by Grants-in-Aid for Scientific Research (S) to Y. W. (24225004) from the Ministry of Education, Culture, Sports, Science, and Technology (Japan) and JST CREST Grant Number JPMJCR15P3, Japan. This work was also supported by JSPS KAKENHI Grant Number JP15H05806 in Precisely Designed Catalysts with Customized Scaffolding to O. S.
